EXPANDER 7.0

EXPANDER (EXpression Analyzer and DisplayER) is a java-based tool for analysis of gene expression data. It seamlessly integrates in one package all analysis steps, including:
- data preprocessing and normalization
- identification of differential genes
- clustering and biclustering;

- Down-stream Enrichment Analyses Of:

  - GO functional categories
  - TF binding sites in promoter regions
  - microRNA sites in 3`-UTRs and
  - chromosomal locations
- network-based analysis of the expression data.

EXPANDER provides support for analysis of human, mouse, rat, chicken, fly, zebrafish, C. elegans, yeast (S. servicia and s. Pombe), arabidopsis, tomato, listeria and E. coli.

Highlights Of Expander5:


  • SAM algorithm for gene (probes) filtration.

  • MATISSE algorithm for network-based detection of gene modules.

  • Interface to the SPIKE software for signalling network-based group analysis.

  • Chromosomal location enrichment analysis

  • FAME algorithm for microRNA targets enrichment analysis of gene groups.

  • Gene chromosomal position display

  • Automatic download of organism-specific data

  • Ability to load .CEL files from new Affymetrix chips.


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Predicted future versions and notices:

The doDownload.com constantly monitors the update of all programs, including information from the EXPANDER 7.0 changelog file, however sometimes it can happen that data are not complete or are outdated.We assume that author continue's to develop 7.1 version with further advanced features, and soon you will be informed. Equally important 8.0 upgrades of the program we will continue to monitor. Full EXPANDER description has been compared with the overall software database and our algorithm has found the following applications (are showed below).